Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs7046167 chr9:72854019 G/C 1.78E-5 492 30.8 31.35 22.45 KM Plot
PRAD rs704730 chr11:34686005 A/G 0.000178 494 20.83 27.77 32.4 KM Plot
PRAD rs7047851 chr9:118220718 A/G 1.39E-6 494 30.93 31.32 15.8 KM Plot
PRAD rs7087362 chr10:131803211 C/T 3.71E-6 485 31.33 29.63 28.98 KM Plot
PRAD rs7096511 chr10:89819111 C/T 2.23E-6 494 29.63 32.9 25.38 KM Plot
PRAD rs7099449 chr10:89757597 C/T 3.51E-10 494 16.05 30.2 31 KM Plot
PRAD rs71010831 chr2:178793737 T/TA 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs7104471 chr11:24248004 T/C 0.000102 485 30.8 34.62 20.47 KM Plot
PRAD rs7106291 chr11:24245361 C/A 0.00018 488 30.8 34.62 20.47 KM Plot
PRAD rs7106494 chr11:24245298 G/A 0.00018 488 30.8 34.62 20.47 KM Plot
PRAD rs7106541 chr11:24245515 C/G 0.00017 489 30.8 34.62 20.47 KM Plot
PRAD rs7111370 chr11:68199008 T/C 1.61E-7 494 29.63 33.6 24.58 KM Plot
PRAD rs7116034 chr11:1337520 T/A 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs7119121 chr11:24248009 G/A 0.000102 485 30.8 34.62 20.47 KM Plot
PRAD rs7119181 chr11:24248274 C/T 0.000164 492 30.87 32.9 20.47 KM Plot